OK just trying to be clear, because I am totally confused by:
"6 pins only uses 4 of them with 4 wires on the 2nd plug onlyone red wire is used on te other plug 1 blue 2 black"
Some of these wires have stripes, such as Blue/White. Look carefully at the wires, roll the wires around in your fingers inspecting for stripes.
So help me, help you... please fill the blanks here
Bike plug #1, wire #1, color: _____________
Bike plug #1, wire #2, color: _____________
Bike plug #2, wire#1, color: _____________
Bike plug #2, wire#2, color: _____________
Bike plug #2, wire#3, color: _____________
Bike plug #2, wire#4, color: _____________
So the original CDI module had two plugs?
Does the new CDI module have two plugs?
Do the plugs on the bike, fit the new CDI?
Did you alter anything to get the new module to plug into the bike?